Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4099

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4098: 12466 - K19950 SEC9 protein transport protein SEC9, at 1357850 to 1359153 12466 mRNA_4099: 12467 - HMMPfam-Phenolic acid decarboxylase (PAD)-PF05870,SUPERFAMILY--SSF50814, at 1359360 to 1360302 12467 mRNA_4100: 12468 - K01253 EPHX1 microsomal epoxide hydrolase, at 1360647 to 1362471 12468

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,359,208 - 0.5
1,359,369 + 0.2
1,359,370 - -0.0
1,359,510 - 12467 mRNA_4099 0.16 0.2
1,359,846 - 12467 mRNA_4099 0.52 1.7
1,359,850 - 12467 mRNA_4099 0.52 1.2
1,359,971 + 12467 mRNA_4099 0.65 0.7
1,360,298 + -0.9
1,360,388 - 0.8
1,360,401 - 1.3
1,360,417 + 0.1
1,360,427 + 0.8
1,360,429 + 0.1
1,360,482 + 0.2
1,360,525 - 1.7
1,360,560 - 0.3
1,360,574 - -0.9
1,360,578 + 1.5
1,360,579 + -0.7
1,360,590 + -0.3
1,360,600 - 0.7
1,360,730 + 1.3
1,360,735 - -0.8
1,360,750 + 0.9
1,360,893 + 12468 mRNA_4100 0.13 1.6
1,360,901 + 12468 mRNA_4100 0.14 -0.3
1,360,902 - 12468 mRNA_4100 0.14 0.1
1,360,988 - 12468 mRNA_4100 0.19 -0.8