Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4095

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4095: 12463 - BLAST Valine--tRNA ligase [Rhizoctonia solani], at 1346768 to 1349335 12463 mRNA_4096: 12464 - BLAST bestrophin domain protein [Rhizoctonia solani AG-3 Rh..., at 1349732 to 1355090 12464

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,345,920 - 0.3
1,346,032 + 0.9
1,346,045 - -0.9
1,346,206 - -0.3
1,346,210 + -1.0
1,346,213 - -0.1
1,346,229 - -0.2
1,346,232 - -0.7
1,346,240 - -0.9
1,346,341 - 1.2
1,346,405 + -0.1
1,346,470 + 0.1
1,346,591 + -0.6
1,346,622 - 0.3
1,346,623 - 0.9
1,346,636 - 0.7
1,346,638 + -0.0
1,346,661 - -0.0
1,346,680 + 3.9
1,346,682 + -0.1
1,346,699 + 0.2
1,346,709 + 0.9
1,346,717 + 1.3
1,346,749 + -0.5
1,346,822 - -0.6
1,346,844 + 2.3
1,346,856 + -0.2
1,346,858 + -0.1
1,346,879 + 1.0
1,346,879 + -0.6
1,346,881 - 0.2
1,346,882 + 3.2
1,346,887 + 1.8
1,346,897 + -0.7
1,346,901 - 0.5
1,347,277 - 12463 mRNA_4095 0.20 0.1
1,347,295 - 12463 mRNA_4095 0.21 1.3
1,347,444 - 12463 mRNA_4095 0.26 -0.2
1,347,555 + 12463 mRNA_4095 0.31 1.1
1,347,594 - 12463 mRNA_4095 0.32 0.4
1,347,703 + 12463 mRNA_4095 0.36 1.6
1,347,891 + 12463 mRNA_4095 0.44 0.2
1,347,962 + 12463 mRNA_4095 0.46 1.3
1,348,370 - 12463 mRNA_4095 0.62 0.1
1,348,391 - 12463 mRNA_4095 0.63 -0.5
1,348,579 + 12463 mRNA_4095 0.71 -0.3
1,348,845 + 12463 mRNA_4095 0.81 -0.1
1,348,857 + 12463 mRNA_4095 0.81 -0.2
1,348,885 - 12463 mRNA_4095 0.82 -1.5
1,348,945 - 12463 mRNA_4095 0.85 -0.7
1,348,989 + 12463 mRNA_4095 0.86 -1.3
1,349,166 + 0.7
1,349,191 + 1.8
1,349,277 - -3.1
1,349,284 - 0.6
1,349,318 + 1.0
1,349,452 - 1.1
1,349,618 + -1.1
1,349,629 + 1.0
1,349,689 - 1.6
1,350,026 - -1.3
1,350,077 + -1.6
1,350,113 - 1.8
1,350,175 + -1.1
1,350,325 + 12464 mRNA_4096 0.11 -0.6
1,350,325 + 12464 mRNA_4096 0.11 -0.1