Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4091

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4090: 12458 - K18327 REXO4, REX4 RNA exonuclease 4, at 1332147 to 1333809 12458 mRNA_4091: 12459 - K03362 FBXW1_11, BTRC, beta-TRCP F-box and WD-40 domain protein 1/11, at 1334109 to 1336957 12459 mRNA_4092: 12460 - KOG0941 E3 ubiquitin protein ligase, at 1337124 to 1338710 12460

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,333,829 - -1.2
1,333,834 - 0.8
1,333,836 + -0.5
1,333,852 - -0.2
1,333,861 - 0.1
1,333,982 - 0.1
1,333,991 + 0.5
1,334,006 + -2.2
1,334,008 + 1.1
1,334,127 - 0.4
1,334,155 - 1.0
1,334,161 - 0.1
1,334,206 + 2.6
1,334,297 - 1.3
1,334,303 + 0.8
1,334,454 - 12459 mRNA_4091 0.12 1.6
1,334,486 + 12459 mRNA_4091 0.13 2.1
1,335,197 - 12459 mRNA_4091 0.38 0.3
1,335,888 + 12459 mRNA_4091 0.62 0.3
1,336,014 + 12459 mRNA_4091 0.67 0.8
1,336,018 + 12459 mRNA_4091 0.67 -0.2
1,336,178 - 12459 mRNA_4091 0.73 0.8
1,336,778 - -1.4
1,336,874 + 0.1
1,336,877 + -0.1
1,337,036 - 1.2
1,337,046 + -0.5
1,337,063 - 0.5
1,337,066 + 0.1
1,337,072 + -0.3
1,337,196 + -2.1
1,337,228 + 1.7
1,337,933 - 12460 mRNA_4092 0.51 -0.7