Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4087

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4086: 12454 - Hypothetical Protein, at 1326247 to 1326813 12454 mRNA_4087: 12455 - HMMPfam-Tannase and feruloyl esterase-PF07519,SUPERFAMILY--SSF53474, at 1327075 to 1329367 12455 mRNA_4088: 12456 - Hypothetical Protein, at 1329492 to 1330466 12456

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,326,101 - 1.0
1,326,178 - -0.4
1,326,180 - 0.8
1,326,225 - -1.5
1,326,282 - -0.1
1,326,285 + 1.0
1,326,737 + 12454 mRNA_4086 0.86 -0.7
1,327,680 + 12455 mRNA_4087 0.26 1.5
1,328,547 + 12455 mRNA_4087 0.64 0.9
1,328,669 + 12455 mRNA_4087 0.70 -0.3
1,328,681 + 12455 mRNA_4087 0.70 1.4
1,328,837 - 12455 mRNA_4087 0.77 -0.3
1,328,989 - 12455 mRNA_4087 0.83 -1.2
1,328,999 + 12455 mRNA_4087 0.84 1.5
1,329,542 - -0.3
1,329,572 - 2.2
1,329,584 - -0.3
1,329,584 + 0.8
1,329,621 + 12456 mRNA_4088 0.13 0.6
1,329,706 - 12456 mRNA_4088 0.22 0.3
1,329,711 - 12456 mRNA_4088 0.22 0.9
1,329,712 + 12456 mRNA_4088 0.23 1.6
1,329,713 - 12456 mRNA_4088 0.23 1.4
1,329,723 + 12456 mRNA_4088 0.24 0.4
1,329,777 + 12456 mRNA_4088 0.29 1.7
1,329,794 + 12456 mRNA_4088 0.31 1.9
1,329,805 + 12456 mRNA_4088 0.32 2.1
1,329,826 + 12456 mRNA_4088 0.34 -0.3
1,329,873 - 12456 mRNA_4088 0.39 0.4
1,329,977 + 12456 mRNA_4088 0.50 0.2
1,330,044 + 12456 mRNA_4088 0.57 -0.2
1,330,047 - 12456 mRNA_4088 0.57 0.0
1,330,161 - 12456 mRNA_4088 0.69 1.4
1,330,164 + 12456 mRNA_4088 0.69 0.3