Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4065

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4064: 12432 - HMMPfam-Rdx family-PF10262,SUPERFAMILY--SSF52833, at 1269727 to 1270597 12432 mRNA_4065: 12433 - KOG1198 Zinc-binding oxidoreductase, at 1270736 to 1272325 12433 mRNA_4066: 12434 - K03426 E3.6.1.22, NUDT12, nudC NAD+ diphosphatase, at 1273272 to 1275258 12434

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,270,051 + 12432 mRNA_4064 0.37 -0.9
1,270,090 + 12432 mRNA_4064 0.42 1.1
1,270,352 + 12432 mRNA_4064 0.72 1.3
1,270,365 - 12432 mRNA_4064 0.73 0.6
1,270,365 - 12432 mRNA_4064 0.73 0.4
1,270,369 - 12432 mRNA_4064 0.74 -1.6
1,270,383 + 12432 mRNA_4064 0.75 1.2
1,270,644 - -0.1
1,270,646 + 0.1
1,270,650 + 0.1
1,270,663 - 0.5
1,270,664 - 0.4
1,270,664 - -0.8
1,270,664 + -0.2
1,270,667 + 2.2
1,270,671 - -0.0
1,270,804 - -1.2
1,270,807 - -0.2
1,270,808 - 0.4
1,270,901 - 12433 mRNA_4065 0.10 0.7
1,271,102 + 12433 mRNA_4065 0.23 -2.2
1,271,408 - 12433 mRNA_4065 0.42 1.0
1,271,765 + 12433 mRNA_4065 0.65 -0.3
1,272,566 - 0.0
1,272,861 - 0.9
1,272,867 + 0.1
1,272,885 - 1.2
1,272,890 + 1.1
1,272,892 - 1.6
1,272,903 + 0.6
1,272,906 - 0.5
1,272,940 + 1.4
1,272,998 + -1.0