Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4025

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4024: 12392 - HMMPfam-Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1)-PF10453,ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103,SMART-zinc finger-SM00356, at 1183513 to 1185147 12392 mRNA_4025: 12393 - K15634 gpmB probable phosphoglycerate mutase, at 1185909 to 1186748 12393 mRNA_4026: 12394 - HMMPfam-Cyclin-PF08613, at 1186887 to 1188212 12394

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,185,513 - -0.2
1,185,542 - 0.5
1,185,544 + 0.9
1,185,545 + 0.2
1,185,551 + 0.0
1,185,839 + 0.5
1,186,091 - 12393 mRNA_4025 0.22 0.4
1,186,364 - 12393 mRNA_4025 0.54 2.1
1,186,385 + 12393 mRNA_4025 0.57 0.4
1,186,644 - 12393 mRNA_4025 0.88 0.1
1,186,649 + 12393 mRNA_4025 0.88 -0.1
1,186,654 + 12393 mRNA_4025 0.89 1.0
1,186,793 + 1.7
1,186,798 + 1.9