Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4014

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4013: 12381 - HMMPfam-DJ-1/PfpI family-PF01965,HMMPfam-N-terminal domain of DJ-1_PfpI family-PF13587,SUPERFAMILY--SSF52317, at 1153401 to 1154671 12381 mRNA_4014: 12382 - KOG0065 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily, at 1154900 to 1159801 12382 mRNA_4015: 12383 - K04512 DAAM dishevelled associated activator of morphogenesis, at 1159964 to 1166346 12383

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,153,989 - 12381 mRNA_4013 0.46 1.7
1,154,559 - -0.8
1,154,590 + 2.5
1,154,594 - 0.9
1,154,680 - 0.4
1,154,732 + 0.6
1,154,738 - 0.3
1,154,742 - 1.5
1,154,742 - 2.1
1,154,745 + 0.2
1,154,745 - -0.6
1,154,748 - 0.5
1,154,758 - 0.6
1,154,761 - 2.2
1,154,764 + 2.6
1,154,764 + -0.1
1,154,770 + 1.5
1,154,778 - 0.6
1,154,788 - -0.2
1,154,788 - 2.0
1,154,789 - 0.7
1,154,790 - 0.4
1,154,793 + 0.7
1,154,798 + -0.8
1,154,813 + -0.2
1,154,911 - -0.5
1,154,913 + 0.3
1,154,920 + 0.5
1,154,936 - 0.4
1,154,952 + 2.3
1,154,956 + -0.1
1,154,956 + 1.8
1,154,958 - 0.9
1,154,962 + 1.0
1,155,100 - -0.1
1,155,109 + 1.4
1,155,119 + -2.5
1,155,129 - 1.7
1,155,557 - 12382 mRNA_4014 0.13 1.1
1,155,902 - 12382 mRNA_4014 0.20 -0.6
1,156,740 - 12382 mRNA_4014 0.38 -0.7
1,157,448 - 12382 mRNA_4014 0.52 0.7
1,157,515 - 12382 mRNA_4014 0.53 0.0
1,157,607 - 12382 mRNA_4014 0.55 0.7
1,157,612 - 12382 mRNA_4014 0.55 0.2
1,157,794 + 12382 mRNA_4014 0.59 0.2
1,157,880 + 12382 mRNA_4014 0.61 0.6
1,157,947 + 12382 mRNA_4014 0.62 0.4
1,158,170 - 12382 mRNA_4014 0.67 -0.7
1,158,206 - 12382 mRNA_4014 0.67 3.4
1,158,211 + 12382 mRNA_4014 0.68 3.1
1,158,368 + 12382 mRNA_4014 0.71 0.8
1,158,456 - 12382 mRNA_4014 0.73 -1.7
1,158,498 + 12382 mRNA_4014 0.73 0.7
1,158,521 - 12382 mRNA_4014 0.74 -2.2
1,158,554 + 12382 mRNA_4014 0.75 -0.2
1,158,725 - 12382 mRNA_4014 0.78 1.5
1,158,798 + 12382 mRNA_4014 0.80 0.3
1,158,837 + 12382 mRNA_4014 0.80 0.6
1,159,151 + 12382 mRNA_4014 0.87 -0.8
1,159,151 + 12382 mRNA_4014 0.87 0.6
1,159,263 - 12382 mRNA_4014 0.89 2.5
1,159,314 + -0.7
1,159,460 + 0.8
1,159,660 - 2.6
1,159,892 - -0.1
1,159,895 + 3.2
1,160,033 - 0.8
1,160,043 - -0.4
1,160,178 - -0.5