Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3980

Experiments: YPD

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3979: 12347 - K07119 K07119 uncharacterized protein, at 1054743 to 1056048 12347 mRNA_3980: 12348 - KOG1196 Predicted NAD-dependent oxidoreductase, at 1056384 to 1057964 12348 mRNA_3981: 12349 - K10660 MARCH5 E3 ubiquitin-protein ligase MARCH5, at 1058258 to 1059791 12349

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YPD
remove
1,055,416 - 12347 mRNA_3979 0.52 -0.9
1,056,083 + 0.6
1,056,126 + 0.6
1,056,129 + -1.4
1,056,132 - 0.6
1,056,133 + 1.2
1,056,139 - -0.7
1,056,141 - -0.6
1,056,142 + 0.5
1,056,145 - -0.3
1,056,145 - -1.9
1,056,150 - -1.4
1,056,177 - -0.6
1,056,189 - -1.5
1,056,190 - -0.5
1,056,191 - 0.4
1,056,193 + 0.2
1,056,195 - 1.3
1,056,196 - -0.5
1,056,198 + 0.7
1,056,201 + -0.8
1,056,211 + -0.6
1,056,212 - -0.7
1,056,234 - -1.9
1,056,251 + -0.9
1,056,267 + -0.1
1,056,268 + -1.2
1,056,286 - 0.4
1,056,299 + 1.7
1,056,302 + -0.3
1,056,309 - -0.4
1,056,338 + 0.1
1,056,440 + 1.6
1,056,746 - 12348 mRNA_3980 0.23 1.1
1,056,752 + 12348 mRNA_3980 0.23 0.6
1,056,901 + 12348 mRNA_3980 0.33 -0.0
1,057,609 + 12348 mRNA_3980 0.77 0.4
1,057,943 + -0.2
1,058,073 - -1.7
1,058,243 + -0.4
1,058,675 - 12349 mRNA_3981 0.27 1.6
1,058,676 - 12349 mRNA_3981 0.27 0.9
1,058,964 + 12349 mRNA_3981 0.46 1.4