Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3966

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3965: 12333 - Hypothetical Protein, at 1015715 to 1016506 12333 mRNA_3966: 12334 - KOG2157 Predicted tubulin-tyrosine ligase, at 1016759 to 1018391 12334 mRNA_3967: 12335 - KOG1972 Uncharacterized conserved protein, at 1018867 to 1022845 12335

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,015,980 - 12333 mRNA_3965 0.33 1.2
1,015,981 - 12333 mRNA_3965 0.34 -0.3
1,015,986 + 12333 mRNA_3965 0.34 2.5
1,016,018 + 12333 mRNA_3965 0.38 0.1
1,016,038 - 12333 mRNA_3965 0.41 0.9
1,016,131 - 12333 mRNA_3965 0.53 1.6
1,016,137 - 12333 mRNA_3965 0.53 -0.0
1,016,166 - 12333 mRNA_3965 0.57 -1.1
1,016,275 - 12333 mRNA_3965 0.71 0.6
1,016,281 - 12333 mRNA_3965 0.71 1.4
1,016,291 + 12333 mRNA_3965 0.73 -0.0
1,016,296 - 12333 mRNA_3965 0.73 3.2
1,016,297 - 12333 mRNA_3965 0.73 0.4
1,016,425 + 12333 mRNA_3965 0.90 -0.8
1,016,426 - 12333 mRNA_3965 0.90 -1.0
1,016,440 + 1.1
1,016,443 + -1.2
1,016,443 - -0.3
1,016,444 + -1.3
1,016,449 - 0.9
1,016,459 + -1.3
1,016,460 - -0.2
1,016,462 - 0.4
1,016,472 + -0.2
1,016,472 + -0.8
1,016,473 + 2.3
1,016,473 - -2.6
1,016,474 + -0.1
1,016,497 - 0.6
1,016,507 + -1.2
1,016,512 + 0.6
1,016,515 - 0.2
1,016,516 + -0.5
1,016,517 - 0.9
1,016,542 + 1.6
1,016,575 + 1.5
1,016,598 - 0.6
1,016,603 - -0.7
1,016,607 - 0.3
1,016,615 - -0.4
1,016,626 - 2.5
1,016,634 - -0.5
1,016,768 - 0.1
1,016,915 - 1.0
1,017,062 + 12334 mRNA_3966 0.19 -0.1
1,017,210 - 12334 mRNA_3966 0.28 1.0
1,017,211 + 12334 mRNA_3966 0.28 0.2
1,017,381 + 12334 mRNA_3966 0.38 1.0
1,017,385 + 12334 mRNA_3966 0.38 0.6
1,017,414 + 12334 mRNA_3966 0.40 -0.4
1,017,495 - 12334 mRNA_3966 0.45 0.6
1,017,499 + 12334 mRNA_3966 0.45 -0.9
1,017,506 + 12334 mRNA_3966 0.46 0.4
1,017,525 + 12334 mRNA_3966 0.47 1.7
1,017,526 - 12334 mRNA_3966 0.47 0.9
1,018,005 + 12334 mRNA_3966 0.76 0.7
1,018,111 + 12334 mRNA_3966 0.83 -0.3
1,018,111 + 12334 mRNA_3966 0.83 1.3
1,018,128 - 12334 mRNA_3966 0.84 0.2
1,018,281 - -0.4
1,018,283 - 1.8
1,018,406 - 0.4
1,018,421 + -0.3
1,018,434 + -0.8
1,018,443 + -0.5
1,018,451 + -1.0
1,018,563 + 0.2
1,018,575 + 1.9
1,018,724 + 1.3
1,018,727 + 0.7
1,019,129 + 0.3