Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3954

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3953: 12321 - Hypothetical Protein, at 983358 to 984692 12321 mRNA_3954: 12322 - KOG1426 FOG RCC1 domain, at 985055 to 988023 12322 mRNA_3955: 12323 - K02355 fusA, GFM, EFG elongation factor G, at 988308 to 991427 12323

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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984,124 + 12321 mRNA_3953 0.57 2.1
984,503 + 12321 mRNA_3953 0.86 2.5
984,513 - 12321 mRNA_3953 0.87 2.2
984,616 - 1.0
984,643 + -0.1
984,645 - 2.2
984,647 - -0.9
984,651 - 0.9
984,659 - -1.7
984,661 - -0.3
984,667 + 0.5
984,667 + 1.1
984,667 + 0.6
984,670 - 0.0
984,799 - 0.1
984,800 + 1.6
984,801 - 0.3
984,805 + -1.2
984,823 - 1.9
984,957 - 1.1
984,971 + 1.3
984,975 - -0.1
984,987 + -0.6
984,995 - -2.1
984,997 + -0.2
985,020 + -1.3
985,060 - 1.7
985,115 - 1.8
985,117 - 0.6
985,253 - -0.2
985,411 - 12322 mRNA_3954 0.12 2.3
985,439 - 12322 mRNA_3954 0.13 0.4
985,568 - 12322 mRNA_3954 0.17 0.4
985,570 + 12322 mRNA_3954 0.17 0.4
985,704 + 12322 mRNA_3954 0.22 -0.2
986,291 - 12322 mRNA_3954 0.42 -0.2
986,590 + 12322 mRNA_3954 0.52 1.9
986,590 + 12322 mRNA_3954 0.52 0.9
986,725 - 12322 mRNA_3954 0.56 3.5
987,016 + 12322 mRNA_3954 0.66 1.0
987,195 + 12322 mRNA_3954 0.72 0.3
987,300 - 12322 mRNA_3954 0.76 -0.3
987,657 + 12322 mRNA_3954 0.88 -1.0
987,847 + 2.1
988,046 + -1.0
988,161 - 1.0
988,164 + -1.1
988,167 + -0.4
988,170 - 0.7
988,174 + -0.6
988,188 + 0.7
988,199 + 0.9