Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3945

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3944: 12312 - BLAST trna guanine-n1-methyltransferase [Ceraceosorus bomba..., at 961006 to 963369 12312 mRNA_3945: 12313 - HMMPfam-Protein of unknown function (DUF2422)-PF10337, at 963699 to 967662 12313 mRNA_3946: 12314 - K06176 truD, PUS7 tRNA pseudouridine13 synthase, at 967876 to 970743 12314

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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962,717 + 12312 mRNA_3944 0.72 -1.2
963,019 + 12312 mRNA_3944 0.85 -0.4
963,478 - -0.1
963,496 - 0.2
963,501 - 0.5
963,502 + 3.3
963,515 + 3.1
963,516 + 1.7
963,517 - -1.0
963,517 - 0.1
963,527 - -1.9
963,529 + -0.3
963,532 - 0.6
963,533 + 0.4
963,665 + 1.1
963,675 - 2.1
963,778 - 0.8
963,797 - -2.5
963,816 + -0.9
964,577 - 12313 mRNA_3945 0.22 -0.6
964,965 + 12313 mRNA_3945 0.32 0.5
965,081 - 12313 mRNA_3945 0.35 1.5
965,579 + 12313 mRNA_3945 0.47 -0.2
965,955 - 12313 mRNA_3945 0.57 0.5
966,179 + 12313 mRNA_3945 0.63 -0.5
966,855 - 12313 mRNA_3945 0.80 -0.5
966,921 - 12313 mRNA_3945 0.81 0.2
967,020 + 12313 mRNA_3945 0.84 0.2
967,636 - 1.0
967,759 + -0.5
967,909 + -1.2
968,235 + 12314 mRNA_3946 0.13 -0.5
968,527 - 12314 mRNA_3946 0.23 1.4
968,539 - 12314 mRNA_3946 0.23 1.4