Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3944

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3943: 12311 - K10843 ERCC3, XPB DNA excision repair protein ERCC-3, at 957047 to 960564 12311 mRNA_3944: 12312 - BLAST trna guanine-n1-methyltransferase [Ceraceosorus bomba..., at 961006 to 963369 12312 mRNA_3945: 12313 - HMMPfam-Protein of unknown function (DUF2422)-PF10337, at 963699 to 967662 12313

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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960,342 - 0.1
960,628 - -0.1
960,647 - 0.6
960,648 + -0.1
960,649 + 1.4
960,795 - -1.3
960,946 - -1.0
961,141 + 0.6
961,175 - 0.6
962,099 - 12312 mRNA_3944 0.46 -1.1
962,593 + 12312 mRNA_3944 0.67 -0.6
962,717 + 12312 mRNA_3944 0.72 -1.2
963,019 + 12312 mRNA_3944 0.85 -0.4
963,478 - -0.1
963,496 - 0.2
963,501 - 0.5
963,502 + 3.3
963,515 + 3.1
963,516 + 1.7
963,517 - -1.0
963,517 - 0.1
963,527 - -1.9
963,529 + -0.3
963,532 - 0.6
963,533 + 0.4
963,665 + 1.1
963,675 - 2.1
963,778 - 0.8
963,797 - -2.5
963,816 + -0.9