Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3942

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3941: 12309 - Hypothetical Protein, at 953111 to 953710 12309 mRNA_3942: 12310 - K20298 VPS52 vacuolar protein sorting-associated protein 52, at 954085 to 956912 12310 mRNA_3943: 12311 - K10843 ERCC3, XPB DNA excision repair protein ERCC-3, at 957047 to 960564 12311

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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953,117 - 0.8
953,718 + -1.1
953,722 + -0.6
953,835 - 0.8
953,838 + 1.9
953,850 - 1.3
953,850 + 0.0
953,851 - 0.7
953,853 + 0.4
953,963 - -0.7
953,966 - 1.4
953,978 - 0.6
953,987 + -1.2
953,989 + -1.2
953,990 + 2.4
953,990 + 1.1
953,991 - -1.8
953,992 + 0.3
953,992 - 1.5
953,994 - 1.4
953,999 + 0.2
953,999 + 0.9
954,003 + 0.9
954,166 + 0.9
954,570 + 12310 mRNA_3942 0.17 0.4
955,491 + 12310 mRNA_3942 0.50 0.5
956,209 - 12310 mRNA_3942 0.75 1.0
956,652 - 0.3
956,657 + 2.0
956,950 - -0.2
956,952 + 1.5
956,958 + 0.0
956,968 - 2.3