Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3928

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3927: 12295 - K10734 GINS3 GINS complex subunit 3, at 921437 to 922417 12295 mRNA_3928: 12296 - HMMPfam-Fungalysin metallopeptidase (M36)-PF02128,HMMPfam-Fungalysin/Thermolysin Propeptide Motif-PF07504,PRINTS-Fungalysin metallopeptidase (M36) signature-PR00999,SUPERFAMILY--SSF55486, at 922643 to 925532 12296 mRNA_3929: 12297 - BLAST TKL/TKL-ccin protein kinase [Mycena chlorophos], at 925744 to 929341 12297

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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922,450 - -1.5
922,468 - -0.0
922,517 + 2.5
922,519 - -0.8
922,522 - -0.0
922,523 - 0.1
922,523 - -0.0
922,542 - -0.3
922,542 + -0.4
922,543 + 0.4
922,562 - 0.4
922,564 + 1.4
922,564 + 2.1
922,564 + 0.5
922,565 - 0.8
922,568 + 0.1
922,569 - 1.8
922,569 - 0.8
922,572 + -0.4
922,573 + 0.4
922,575 + -0.0
922,577 - -1.2
922,579 - 0.2
922,581 + 0.9
922,587 + 0.2
922,587 - -0.1
922,591 + -1.2
922,598 + -0.4
922,607 + 2.1
922,746 - 0.4
922,859 - -0.0
922,905 + 1.4
923,042 - 12296 mRNA_3928 0.14 0.4
923,181 - 12296 mRNA_3928 0.19 -0.4
923,183 + 12296 mRNA_3928 0.19 0.3
923,463 - 12296 mRNA_3928 0.28 0.2
924,349 - 12296 mRNA_3928 0.59 0.9
924,963 + 12296 mRNA_3928 0.80 1.9
925,369 + -0.4
925,375 - 1.9
925,439 - -0.4
925,488 + 0.2
925,753 - 0.3
925,762 - -1.4
925,770 + -1.3
925,786 - 2.0
925,794 - -0.1
925,796 - -0.4
925,813 - -0.4
925,815 + 0.0
925,824 + 0.3
925,833 + -0.3
925,835 - -0.3
925,838 + 2.3
925,839 - -0.2
925,840 - 1.2
925,841 + 0.4
925,976 - -1.0
926,107 - 12297 mRNA_3929 0.10 0.9
926,131 - 12297 mRNA_3929 0.11 -0.8
926,161 + 12297 mRNA_3929 0.12 2.8
926,322 + 12297 mRNA_3929 0.16 1.3