Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3920

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3919: 12287 - KOG4020 Protein DRE2, required for cell viability, at 897887 to 899209 12287 mRNA_3920: 12288 - K12767 RIM15 serine/threonine-protein kinase RIM15, at 899540 to 908734 12288

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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899,255 + 0.1
899,289 + 1.0
899,293 + 0.3
899,400 + 1.0
899,426 + 2.0
900,000 + -0.1
900,153 - 1.3
900,160 - 2.3
900,311 - -0.8
900,562 + 12288 mRNA_3920 0.11 0.4
900,763 - 12288 mRNA_3920 0.13 -0.2
901,485 + 12288 mRNA_3920 0.21 1.6
901,496 + 12288 mRNA_3920 0.21 0.1
901,909 + 12288 mRNA_3920 0.26 0.1
902,151 - 12288 mRNA_3920 0.28 -0.8
902,538 - 12288 mRNA_3920 0.33 -0.4
902,580 + 12288 mRNA_3920 0.33 0.1
902,666 - 12288 mRNA_3920 0.34 0.0
903,121 + 12288 mRNA_3920 0.39 2.7
903,256 - 12288 mRNA_3920 0.40 -1.1
903,537 + 12288 mRNA_3920 0.43 1.8
903,573 + 12288 mRNA_3920 0.44 -0.1
903,694 - 12288 mRNA_3920 0.45 1.7
903,819 - 12288 mRNA_3920 0.47 -1.6
903,929 - 12288 mRNA_3920 0.48 1.5
904,010 - 12288 mRNA_3920 0.49 0.3
904,076 - 12288 mRNA_3920 0.49 -0.8
904,210 + 12288 mRNA_3920 0.51 0.2
904,250 + 12288 mRNA_3920 0.51 -1.0
904,305 - 12288 mRNA_3920 0.52 0.9
904,781 + 12288 mRNA_3920 0.57 0.6
904,941 + 12288 mRNA_3920 0.59 -1.4
905,028 + 12288 mRNA_3920 0.60 -0.5
905,061 - 12288 mRNA_3920 0.60 -2.6
905,076 - 12288 mRNA_3920 0.60 1.3
905,106 + 12288 mRNA_3920 0.61 2.0
905,219 - 12288 mRNA_3920 0.62 1.4
905,346 + 12288 mRNA_3920 0.63 -0.1
905,385 - 12288 mRNA_3920 0.64 -1.8
905,720 - 12288 mRNA_3920 0.67 -0.9
907,285 - 12288 mRNA_3920 0.84 1.9
907,294 - 12288 mRNA_3920 0.84 -1.7
907,300 + 12288 mRNA_3920 0.84 1.0
907,779 + 12288 mRNA_3920 0.90 1.3
908,313 + 0.5
908,422 - 0.1
908,447 - 0.0
908,593 - -0.3
908,608 + 0.2
908,645 - -1.8
908,754 + -0.1
908,772 + 1.0
908,782 + 0.8
908,782 + -0.1
908,787 - -1.6
908,788 + 0.2
908,932 - 1.6
908,933 - 0.5
908,993 + 0.3
909,062 + -1.2
909,070 - -0.3
909,078 - 0.0
909,080 - 1.5
909,141 + 1.7
909,237 - 1.3
909,367 + -0.1
909,390 - 0.5
909,407 + 0.0
909,507 + 0.3
909,519 - -0.5
909,519 - -2.9
909,560 + 0.0
909,657 + -0.2