Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3910

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3909: 12277 - K10638 UHRF1, NP95 E3 ubiquitin-protein ligase UHRF1, at 872113 to 873418 12277 mRNA_3910: 12278 - KOG0587 Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases, at 874209 to 878555 12278 mRNA_3911: 12279 - K18655 DDX19, DBP5 ATP-dependent RNA helicase DDX19/DBP5, at 878883 to 880998 12279

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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873,278 + 12277 mRNA_3909 0.89 0.8
873,470 - 1.5
873,478 - -1.0
873,496 + -1.0
873,496 - 1.8
873,515 - -1.0
873,516 - 0.2
873,526 - -0.2
873,626 - 0.1
874,083 - -1.4
874,104 - 1.1
874,111 + 0.8
874,230 - -0.8
874,646 - 12278 mRNA_3910 0.10 1.7
874,833 - 12278 mRNA_3910 0.14 -1.9
875,595 + 12278 mRNA_3910 0.32 0.6
876,587 - 12278 mRNA_3910 0.55 0.3
876,915 - 12278 mRNA_3910 0.62 -0.4
876,978 - 12278 mRNA_3910 0.64 -0.3
877,144 + 12278 mRNA_3910 0.68 -1.7
877,194 + 12278 mRNA_3910 0.69 0.4
877,620 + 12278 mRNA_3910 0.78 -0.8
877,905 - 12278 mRNA_3910 0.85 1.4
878,012 - 12278 mRNA_3910 0.87 0.0
878,142 + 0.7
878,284 + -0.2
878,492 - 1.9
878,526 + 1.1
878,636 + -0.6
878,638 - -0.9
878,645 - 2.3
878,665 + -0.2
878,667 + 0.2
878,788 - 2.3
878,791 - -0.0
878,791 - 0.7
878,796 + -1.7
878,797 + -1.6
878,805 - 0.1
878,806 + 1.3
878,827 - 1.4