Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3909

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3908: 12276 - Interpro Protein of unknown function (DUF2945), at 870118 to 872012 12276 mRNA_3909: 12277 - K10638 UHRF1, NP95 E3 ubiquitin-protein ligase UHRF1, at 872113 to 873418 12277 mRNA_3910: 12278 - KOG0587 Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases, at 874209 to 878555 12278

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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871,417 - 12276 mRNA_3908 0.69 -1.4
871,713 + 12276 mRNA_3908 0.84 0.9
871,874 + 1.4
872,153 + -1.1
872,198 + 0.9
872,611 - 12277 mRNA_3909 0.38 1.4
872,731 + 12277 mRNA_3909 0.47 -0.0
872,732 - 12277 mRNA_3909 0.47 1.1
872,773 + 12277 mRNA_3909 0.51 1.6
872,874 - 12277 mRNA_3909 0.58 0.3
873,278 + 12277 mRNA_3909 0.89 0.8
873,470 - 1.5
873,478 - -1.0
873,496 + -1.0
873,496 - 1.8
873,515 - -1.0
873,516 - 0.2
873,526 - -0.2
873,626 - 0.1
874,083 - -1.4
874,104 - 1.1
874,111 + 0.8
874,230 - -0.8