Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3908

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3907: 12275 - Hypothetical Protein, at 869074 to 869751 12275 mRNA_3908: 12276 - Interpro Protein of unknown function (DUF2945), at 870118 to 872012 12276 mRNA_3909: 12277 - K10638 UHRF1, NP95 E3 ubiquitin-protein ligase UHRF1, at 872113 to 873418 12277

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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869,164 - 12275 mRNA_3907 0.13 0.1
869,182 + 12275 mRNA_3907 0.16 -0.9
869,184 - 12275 mRNA_3907 0.16 1.2
869,782 + 0.2
869,885 - 2.9
870,154 + -1.5
870,195 - 0.8
870,272 - 1.5
870,295 - 0.5
870,297 + -0.1
870,321 - 12276 mRNA_3908 0.11 0.8
870,327 - 12276 mRNA_3908 0.11 0.9
870,328 + 12276 mRNA_3908 0.11 0.8
870,330 + 12276 mRNA_3908 0.11 -0.6
870,330 + 12276 mRNA_3908 0.11 0.4
870,345 + 12276 mRNA_3908 0.12 2.1
870,347 - 12276 mRNA_3908 0.12 0.5
870,348 + 12276 mRNA_3908 0.12 0.4
870,348 + 12276 mRNA_3908 0.12 2.8
870,348 - 12276 mRNA_3908 0.12 0.8
870,375 - 12276 mRNA_3908 0.14 -0.3
870,378 - 12276 mRNA_3908 0.14 -2.8
870,403 - 12276 mRNA_3908 0.15 0.2
870,489 + 12276 mRNA_3908 0.20 -0.7
870,505 + 12276 mRNA_3908 0.20 2.5
870,509 - 12276 mRNA_3908 0.21 -0.6
870,517 - 12276 mRNA_3908 0.21 -0.2
870,520 - 12276 mRNA_3908 0.21 2.7
870,531 + 12276 mRNA_3908 0.22 0.3
870,541 + 12276 mRNA_3908 0.22 -0.2
870,563 - 12276 mRNA_3908 0.23 0.5
870,679 + 12276 mRNA_3908 0.30 -1.4
870,707 + 12276 mRNA_3908 0.31 -2.1
870,715 + 12276 mRNA_3908 0.32 -0.2
870,837 - 12276 mRNA_3908 0.38 -0.0
871,015 + 12276 mRNA_3908 0.47 -0.2
871,417 - 12276 mRNA_3908 0.69 -1.4
871,713 + 12276 mRNA_3908 0.84 0.9
871,874 + 1.4
872,153 + -1.1
872,198 + 0.9
872,611 - 12277 mRNA_3909 0.38 1.4
872,731 + 12277 mRNA_3909 0.47 -0.0
872,732 - 12277 mRNA_3909 0.47 1.1
872,773 + 12277 mRNA_3909 0.51 1.6
872,874 - 12277 mRNA_3909 0.58 0.3