Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3889

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3888: 12256 - HMMPfam-GDSL-like Lipase/Acylhydrolase family-PF13472,SUPERFAMILY--SSF52266, at 829400 to 831173 12256 mRNA_3889: 12257 - K00587 ICMT, STE14 protein-S-isoprenylcysteine O-methyltransferase, at 831384 to 832562 12257 mRNA_3890: 12258 - HMMPfam-Pal1 cell morphology protein-PF08316, at 832975 to 835014 12258

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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830,790 + 12256 mRNA_3888 0.78 2.6
830,981 - 12256 mRNA_3888 0.89 -0.3
831,093 - 0.6
831,164 + 0.9
831,224 + -0.8
831,232 - -0.3
831,232 - -0.4
831,239 + -1.0
831,242 - -0.8
831,246 + 0.2
831,251 - -1.0
831,254 - -1.8
831,260 - 0.5
831,261 + 1.2
831,263 + -1.5
831,264 + -0.6
831,276 + 0.3
831,288 + -0.6
831,293 - 0.0
831,300 - 0.9
831,314 - -0.3
831,316 - 1.2
831,320 - -0.4
831,351 - 1.8
831,354 - 1.4
831,365 - 0.8
831,435 - -0.4
831,614 - 12257 mRNA_3889 0.20 -0.5
831,777 + 12257 mRNA_3889 0.33 -1.5
831,855 + 12257 mRNA_3889 0.40 2.5
832,169 + 12257 mRNA_3889 0.67 -2.9
832,174 - 12257 mRNA_3889 0.67 -0.9
832,205 + 12257 mRNA_3889 0.70 0.3
832,208 + 12257 mRNA_3889 0.70 -0.8
832,361 + 12257 mRNA_3889 0.83 -0.3
832,362 + 12257 mRNA_3889 0.83 -0.9
832,500 - 0.7
832,510 + 0.2
832,661 - 1.8
832,679 + 2.5
832,705 + 0.2
832,797 + -1.6
832,820 + 0.6
832,826 - 1.0
832,847 - 2.5
833,073 + -1.8
833,532 - 12258 mRNA_3890 0.27 -0.0