Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3883

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3882: 12250 - Hypothetical Protein, at 815200 to 816864 12250 mRNA_3883: 12251 - K01784 galE, GALE UDP-glucose 4-epimerase, at 817567 to 820111 12251 mRNA_3884: 12252 - Hypothetical Protein, at 820246 to 821511 12252

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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816,591 - 12250 mRNA_3882 0.84 -0.0
816,601 + 12250 mRNA_3882 0.84 0.7
816,851 + 1.4
816,857 + -1.0
816,865 + 2.2
816,904 - -0.6
816,915 - 0.2
817,016 + 1.0
817,037 - -0.2
817,040 + 0.3
817,041 - -0.0
817,054 - 2.4
817,060 - -0.9
817,063 + -0.5
817,068 + 1.1
817,068 + -0.4
817,104 + -0.1
817,111 + -1.0
817,112 - -0.3
817,115 + 0.6
817,133 + 2.1
817,141 + 0.4
817,161 - 0.4
817,168 + -0.2
817,169 - 1.9
817,179 + 0.3
817,183 - -1.7
817,195 - -0.6
817,196 + -0.4
817,201 + 2.6
817,274 - -0.3
817,344 + -3.7
817,351 + 0.2
817,372 + 1.8
817,383 + 1.5
817,489 - 0.5
817,501 - 0.6
817,503 + 2.8
817,512 + -0.0
817,518 - 0.3
817,623 - 0.6
817,646 + 3.0
817,651 + 1.6
817,660 + 1.2
817,694 + -0.8
817,831 - 12251 mRNA_3883 0.10 -0.1
817,909 - 12251 mRNA_3883 0.13 -1.0
817,968 + 12251 mRNA_3883 0.16 0.9
817,975 + 12251 mRNA_3883 0.16 -0.1
818,098 - 12251 mRNA_3883 0.21 -0.6
818,266 + 12251 mRNA_3883 0.27 -0.1
818,463 - 12251 mRNA_3883 0.35 -0.2
818,676 - 12251 mRNA_3883 0.44 1.4
818,697 - 12251 mRNA_3883 0.44 3.7
818,829 + 12251 mRNA_3883 0.50 0.4
818,832 - 12251 mRNA_3883 0.50 1.9
818,875 + 12251 mRNA_3883 0.51 0.2
819,026 + 12251 mRNA_3883 0.57 0.5
819,307 + 12251 mRNA_3883 0.68 -1.0
819,623 - 12251 mRNA_3883 0.81 0.5
820,020 + -0.4
820,055 - -1.2
820,162 + 1.0
820,203 + -0.5
820,328 - 0.1
820,351 + -0.6
820,560 + 12252 mRNA_3884 0.25 -1.2
820,587 - 12252 mRNA_3884 0.27 0.2
820,658 - 12252 mRNA_3884 0.33 0.6
820,914 + 12252 mRNA_3884 0.53 -0.3
820,927 - 12252 mRNA_3884 0.54 -0.2
821,072 + 12252 mRNA_3884 0.65 0.4