Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3880

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3879: 12247 - Interpro Selenoprotein SelK_SelG, at 811174 to 811650 12247 mRNA_3880: 12248 - K00262 E1.4.1.4, gdhA glutamate dehydrogenase (NADP+), at 812217 to 813988 12248 mRNA_3881: 12249 - Hypothetical Protein, at 814368 to 814862 12249

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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811,271 + 12247 mRNA_3879 0.20 0.5
811,297 - 12247 mRNA_3879 0.26 2.7
811,303 - 12247 mRNA_3879 0.27 -2.2
811,593 - 12247 mRNA_3879 0.88 0.9
811,603 - -0.2
811,625 + 0.1
812,620 + 12248 mRNA_3880 0.23 0.9
812,764 + 12248 mRNA_3880 0.31 -0.5
812,788 + 12248 mRNA_3880 0.32 -0.0
813,371 - 12248 mRNA_3880 0.65 -0.8
813,668 + 12248 mRNA_3880 0.82 0.8
813,906 - -1.1
813,937 + -0.1
814,071 + 0.0
814,073 + -0.4
814,079 - -0.3
814,086 - 0.9
814,086 - -0.0
814,093 - 1.7
814,094 + -2.5
814,095 + 0.4
814,098 - -0.5
814,110 - -0.6
814,113 + -0.2
814,119 - -0.0
814,121 + 0.9
814,128 + 1.1
814,137 - 0.5
814,138 - 0.4
814,144 + 1.5
814,152 - -0.8
814,154 - -0.0
814,162 + -0.4
814,162 - 0.8
814,171 - 1.5
814,189 - -0.4
814,197 + 1.7
814,304 + 0.1
814,305 - -2.7
814,316 + 0.5
814,317 - -0.2
814,320 - -0.6
814,333 + 0.3
814,334 + 0.6
814,356 + 0.4
814,386 - 1.9
814,398 - -0.4
814,402 - 0.2
814,405 + 0.8
814,421 - 12249 mRNA_3881 0.11 -1.4
814,422 + 12249 mRNA_3881 0.11 -0.9
814,472 - 12249 mRNA_3881 0.21 -0.4
814,477 + 12249 mRNA_3881 0.22 0.2
814,478 - 12249 mRNA_3881 0.22 -0.4
814,492 - 12249 mRNA_3881 0.25 -0.6
814,492 + 12249 mRNA_3881 0.25 0.2
814,499 + 12249 mRNA_3881 0.26 1.1
814,506 - 12249 mRNA_3881 0.28 0.4
814,529 - 12249 mRNA_3881 0.33 -0.3
814,539 + 12249 mRNA_3881 0.35 -0.0
814,582 - 12249 mRNA_3881 0.43 1.7
814,651 - 12249 mRNA_3881 0.57 2.3
814,799 - 12249 mRNA_3881 0.87 -0.4
814,806 - 12249 mRNA_3881 0.88 -0.6
814,806 - 12249 mRNA_3881 0.88 -0.6
814,942 + 1.4
814,943 - 1.8
814,951 - 1.1
814,973 + 1.1