Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3862

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3861: 12229 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 766288 to 767441 12229 mRNA_3862: 12230 - SUPERFAMILY--SSF52047, at 767659 to 769319 12230 mRNA_3863: 12231 - KOG1434 Meiotic recombination protein Dmc1, at 769821 to 771118 12231

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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766,759 + 12229 mRNA_3861 0.41 0.7
766,782 + 12229 mRNA_3861 0.43 -1.6
766,861 + 12229 mRNA_3861 0.50 0.3
766,935 + 12229 mRNA_3861 0.56 2.1
766,936 + 12229 mRNA_3861 0.56 -0.5
766,966 + 12229 mRNA_3861 0.59 0.2
767,016 - 12229 mRNA_3861 0.63 1.8
767,317 - 12229 mRNA_3861 0.89 0.6
767,320 - 12229 mRNA_3861 0.89 0.9
767,353 - -1.2
767,370 + -0.1
767,519 + 1.7
767,594 - -0.6
767,595 + 0.3
767,642 - 1.0
767,741 + 0.0
767,845 - 12230 mRNA_3862 0.11 -0.6
768,086 + 12230 mRNA_3862 0.26 -0.0
768,188 + 12230 mRNA_3862 0.32 1.4
768,218 + 12230 mRNA_3862 0.34 -0.4
768,416 + 12230 mRNA_3862 0.46 -0.2
768,894 - 12230 mRNA_3862 0.74 0.9
768,916 - 12230 mRNA_3862 0.76 1.1
769,102 - 12230 mRNA_3862 0.87 0.5
769,234 - 0.2
769,310 + 0.1
769,409 - -2.4
769,419 + 2.6
769,468 - 0.4
769,862 - -1.1
769,868 + -1.2
769,909 + -1.5