Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3861

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3860: 12228 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 763401 to 765833 12228 mRNA_3861: 12229 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 766288 to 767441 12229 mRNA_3862: 12230 - SUPERFAMILY--SSF52047, at 767659 to 769319 12230

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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765,311 - 12228 mRNA_3860 0.79 1.8
765,342 - 12228 mRNA_3860 0.80 0.2
765,343 + 12228 mRNA_3860 0.80 -0.9
765,361 + 12228 mRNA_3860 0.81 1.4
765,431 - 12228 mRNA_3860 0.83 -1.2
765,576 - 12228 mRNA_3860 0.89 -2.1
765,584 + 12228 mRNA_3860 0.90 -0.4
765,729 + 1.1
765,857 + 1.8
766,046 + -0.8
766,177 - 0.1
766,316 - 0.2
766,319 + 2.1
766,425 - 12229 mRNA_3861 0.12 -1.6
766,426 + 12229 mRNA_3861 0.12 -0.3
766,464 + 12229 mRNA_3861 0.15 0.9
766,485 - 12229 mRNA_3861 0.17 0.8
766,541 + 12229 mRNA_3861 0.22 -0.5
766,633 + 12229 mRNA_3861 0.30 0.8
766,759 + 12229 mRNA_3861 0.41 0.7
766,782 + 12229 mRNA_3861 0.43 -1.6
766,861 + 12229 mRNA_3861 0.50 0.3
766,935 + 12229 mRNA_3861 0.56 2.1
766,936 + 12229 mRNA_3861 0.56 -0.5
766,966 + 12229 mRNA_3861 0.59 0.2
767,016 - 12229 mRNA_3861 0.63 1.8
767,317 - 12229 mRNA_3861 0.89 0.6
767,320 - 12229 mRNA_3861 0.89 0.9
767,353 - -1.2
767,370 + -0.1
767,519 + 1.7
767,594 - -0.6
767,595 + 0.3
767,642 - 1.0
767,741 + 0.0
767,845 - 12230 mRNA_3862 0.11 -0.6
768,086 + 12230 mRNA_3862 0.26 -0.0
768,188 + 12230 mRNA_3862 0.32 1.4
768,218 + 12230 mRNA_3862 0.34 -0.4
768,416 + 12230 mRNA_3862 0.46 -0.2