Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3860

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3859: 12227 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 762082 to 763041 12227 mRNA_3860: 12228 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 763401 to 765833 12228 mRNA_3861: 12229 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 766288 to 767441 12229

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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762,413 - 12227 mRNA_3859 0.34 -0.3
762,552 + 12227 mRNA_3859 0.49 -0.5
762,570 + 12227 mRNA_3859 0.51 -0.0
762,669 - 12227 mRNA_3859 0.61 2.3
763,096 - -0.4
763,111 - 0.9
763,130 + 3.6
763,276 - 0.6
763,418 - 0.2
763,540 + 0.1
763,652 + 12228 mRNA_3860 0.10 -0.8
763,654 - 12228 mRNA_3860 0.10 0.1
763,866 - 12228 mRNA_3860 0.19 1.3
763,931 - 12228 mRNA_3860 0.22 1.3
763,976 - 12228 mRNA_3860 0.24 -1.8
763,977 + 12228 mRNA_3860 0.24 1.3
763,977 + 12228 mRNA_3860 0.24 -0.1
764,103 - 12228 mRNA_3860 0.29 -1.4
764,230 + 12228 mRNA_3860 0.34 -0.8
764,286 + 12228 mRNA_3860 0.36 -2.5
764,421 + 12228 mRNA_3860 0.42 0.7
764,445 - 12228 mRNA_3860 0.43 0.9
764,447 - 12228 mRNA_3860 0.43 -0.1
764,455 - 12228 mRNA_3860 0.43 0.4
764,563 - 12228 mRNA_3860 0.48 -0.0
764,615 + 12228 mRNA_3860 0.50 0.4
764,864 + 12228 mRNA_3860 0.60 -0.3
764,870 + 12228 mRNA_3860 0.60 -1.3
764,895 + 12228 mRNA_3860 0.61 0.2
765,175 + 12228 mRNA_3860 0.73 1.8
765,311 - 12228 mRNA_3860 0.79 1.8
765,342 - 12228 mRNA_3860 0.80 0.2
765,343 + 12228 mRNA_3860 0.80 -0.9
765,361 + 12228 mRNA_3860 0.81 1.4
765,431 - 12228 mRNA_3860 0.83 -1.2
765,576 - 12228 mRNA_3860 0.89 -2.1
765,584 + 12228 mRNA_3860 0.90 -0.4
765,729 + 1.1
765,857 + 1.8
766,046 + -0.8
766,177 - 0.1
766,316 - 0.2
766,319 + 2.1
766,425 - 12229 mRNA_3861 0.12 -1.6
766,426 + 12229 mRNA_3861 0.12 -0.3
766,464 + 12229 mRNA_3861 0.15 0.9
766,485 - 12229 mRNA_3861 0.17 0.8
766,541 + 12229 mRNA_3861 0.22 -0.5
766,633 + 12229 mRNA_3861 0.30 0.8
766,759 + 12229 mRNA_3861 0.41 0.7
766,782 + 12229 mRNA_3861 0.43 -1.6