Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3848

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3847: 12215 - Hypothetical Protein, at 732647 to 733359 12215 mRNA_3848: 12216 - KOG1817 Ribonuclease, at 733873 to 734892 12216 mRNA_3849: 12217 - Hypothetical Protein, at 735253 to 736177 12217

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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733,234 - 12215 mRNA_3847 0.82 -0.9
733,346 + -1.9
733,381 + -0.6
733,491 + 0.4
733,513 + -1.0
733,792 + -0.9
733,792 + 1.8
733,798 + -0.4
733,803 + -0.1
733,803 - 0.7
733,811 + 0.5
733,813 - 0.8
733,816 - 0.7
733,824 - -0.5
733,933 - 0.3
733,946 - 0.0
733,958 - 0.1
733,968 - -0.9
733,971 + 2.0
733,972 - 0.6
734,102 - 12216 mRNA_3848 0.22 0.1
734,127 + 12216 mRNA_3848 0.25 0.0
734,129 + 12216 mRNA_3848 0.25 3.0
734,261 - 12216 mRNA_3848 0.38 -0.2
734,439 - 12216 mRNA_3848 0.55 0.7
734,683 + 12216 mRNA_3848 0.79 -1.3
734,797 + -0.5
734,841 + -1.3
734,982 - -1.8
735,148 + -0.8
735,170 - -0.7
735,180 + -0.8
735,237 - 0.1
735,274 + -1.4
735,304 - -0.1
735,310 + -1.0
735,312 + 0.3
735,314 + 0.7
735,317 - 0.9
735,327 - -0.0
735,370 - 12217 mRNA_3849 0.13 1.1
735,396 - 12217 mRNA_3849 0.15 -0.4
735,438 - 12217 mRNA_3849 0.20 -0.9
735,446 + 12217 mRNA_3849 0.21 2.7
735,456 + 12217 mRNA_3849 0.22 1.8
735,500 + 12217 mRNA_3849 0.27 0.5
735,518 - 12217 mRNA_3849 0.29 -0.4
735,521 + 12217 mRNA_3849 0.29 0.6
735,568 + 12217 mRNA_3849 0.34 -1.8
735,590 - 12217 mRNA_3849 0.36 1.0
735,605 + 12217 mRNA_3849 0.38 3.7
735,612 + 12217 mRNA_3849 0.39 -1.5
735,626 + 12217 mRNA_3849 0.40 0.3
735,668 + 12217 mRNA_3849 0.45 0.1
735,701 + 12217 mRNA_3849 0.48 0.4
735,715 + 12217 mRNA_3849 0.50 -0.0
735,794 + 12217 mRNA_3849 0.58 0.9
735,815 - 12217 mRNA_3849 0.61 -0.5
735,862 - 12217 mRNA_3849 0.66 0.2