Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3829

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3828: 12196 - Hypothetical Protein, at 682813 to 683280 12196 mRNA_3829: 12197 - KOG0519 Sensory transduction histidine kinase, at 684010 to 687695 12197 mRNA_3830: 12198 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 688387 to 689344 12198

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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683,108 - 12196 mRNA_3828 0.63 -0.7
683,128 - 12196 mRNA_3828 0.67 1.1
683,139 - 12196 mRNA_3828 0.70 1.2
683,143 - 12196 mRNA_3828 0.71 -0.3
683,149 + 12196 mRNA_3828 0.72 -0.3
683,152 - 12196 mRNA_3828 0.72 0.6
683,156 + 12196 mRNA_3828 0.73 0.9
683,166 - 12196 mRNA_3828 0.75 1.3
683,166 - 12196 mRNA_3828 0.75 -0.2
683,167 - 12196 mRNA_3828 0.76 -0.2
683,168 + 12196 mRNA_3828 0.76 1.5
683,170 - 12196 mRNA_3828 0.76 1.1
683,172 + 12196 mRNA_3828 0.77 0.9
683,173 - 12196 mRNA_3828 0.77 0.5
683,174 + 12196 mRNA_3828 0.77 -1.4
683,179 + 12196 mRNA_3828 0.78 -0.7
683,190 + 12196 mRNA_3828 0.81 -0.1
683,196 - 12196 mRNA_3828 0.82 1.0
683,201 + 12196 mRNA_3828 0.83 1.3
683,205 + 12196 mRNA_3828 0.84 0.3
683,205 + 12196 mRNA_3828 0.84 -0.2
683,213 + 12196 mRNA_3828 0.85 -0.0
683,217 - 12196 mRNA_3828 0.86 0.5
683,218 + 12196 mRNA_3828 0.87 -0.1
683,219 - 12196 mRNA_3828 0.87 0.9
683,226 + 12196 mRNA_3828 0.88 -0.8
683,230 - 12196 mRNA_3828 0.89 0.1
683,233 + 12196 mRNA_3828 0.90 -0.6
683,236 + -0.1
683,264 + 2.0
683,268 + -0.9
683,331 - 0.7
683,366 - 0.7
683,366 + -0.1
683,367 - -1.1
683,376 - 0.4
683,379 - 1.1
683,380 - 0.6
683,383 + 0.0
683,385 - 0.5
683,402 - 1.6
683,409 - 3.9
683,410 + -0.1
683,410 - 2.9
683,410 - 0.6
683,411 - -1.6
683,414 + 1.4
683,417 - 1.3
683,418 + -0.1
683,419 - -0.0
683,421 - 2.6
683,423 + 1.8
683,438 - -1.1
683,444 - -0.1
683,448 - -0.8
683,461 + 2.7
683,463 - 0.8
683,465 + 0.2
683,467 - 0.3
683,469 - -2.5
683,475 - 1.4
683,476 - -0.5
683,478 + 1.7
683,480 - -0.3
683,485 + 0.6
683,504 + 0.4
683,507 - 0.2
683,508 + 0.7
683,510 + 0.7
683,511 - 0.8
683,515 + -1.5
683,525 + -2.7
683,600 - -0.5
683,626 - -0.6
683,638 + -0.8
683,692 + 1.8
683,792 + 0.7
683,792 + 1.5
683,794 + -0.9
683,797 - -0.2
683,802 - 0.3
683,813 + -1.9
683,821 - 0.9
683,824 - 0.9
683,950 + 0.1
684,110 - 0.3
684,557 + 12197 mRNA_3829 0.15 -0.0
684,920 + 12197 mRNA_3829 0.25 0.1
684,980 + 12197 mRNA_3829 0.26 -0.9
685,012 - 12197 mRNA_3829 0.27 -0.8
685,220 - 12197 mRNA_3829 0.33 1.7
685,268 - 12197 mRNA_3829 0.34 1.1
685,372 + 12197 mRNA_3829 0.37 0.3
685,658 + 12197 mRNA_3829 0.45 0.1
686,869 - 12197 mRNA_3829 0.78 2.9
687,168 + 12197 mRNA_3829 0.86 0.0
687,182 + 12197 mRNA_3829 0.86 2.2
687,200 + 12197 mRNA_3829 0.87 -0.1
687,202 - 12197 mRNA_3829 0.87 0.3
687,220 + 12197 mRNA_3829 0.87 0.0
687,241 - 12197 mRNA_3829 0.88 2.5
687,247 - 12197 mRNA_3829 0.88 -0.8
687,950 + 0.1
688,305 + 0.9