Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3826

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3825: 12193 - K02941 RP-LP0, RPLP0 large subunit ribosomal protein LP0, at 671427 to 672513 12193 mRNA_3826: 12194 - Hypothetical Protein, at 673112 to 675577 12194

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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672,954 - -0.5
672,954 - -1.2
672,968 - -0.1
672,968 - 2.4
672,968 + 1.2
672,971 - 1.7
672,975 + 0.2
672,978 + 1.0
672,982 + 1.7
672,985 + 2.4
672,986 - -1.2
672,986 - 1.2
672,990 + -0.2
672,993 - -0.6
672,995 + -0.1
673,008 + 1.6
673,009 + 2.4
673,010 + 1.8
673,011 + -0.3
673,021 + 2.1
673,022 + -1.1
673,062 + -1.4
673,178 - 0.8
673,187 - 2.9
673,320 + 0.9
673,486 + 12194 mRNA_3826 0.15 3.1
673,645 + 12194 mRNA_3826 0.22 0.7
673,656 + 12194 mRNA_3826 0.22 -0.1
674,191 + 12194 mRNA_3826 0.44 1.5
674,405 + 12194 mRNA_3826 0.52 -0.8
675,218 - 12194 mRNA_3826 0.85 0.3
675,331 + 1.4
675,498 + -1.2
675,513 + -1.4
675,517 + 0.3
675,527 - -0.2
675,553 + 1.7
675,614 - 0.3
675,617 - 2.8
675,633 - 1.5
675,647 - 0.7
675,648 + 1.0
675,651 - 0.2
675,656 - 0.5
675,663 + 4.4
675,667 - -0.0
675,673 - 0.5
675,681 - 0.2
675,683 + -0.1
675,690 - -0.5
675,693 - 0.0
675,694 - 1.5
675,695 + 0.9
675,696 - -0.9
675,696 + 0.9
675,697 - 0.4
675,703 + 0.6
675,703 + 0.6
675,706 + -1.0
675,711 - -1.1
675,713 - -0.3
675,838 - 1.9
675,856 - -0.4
675,862 - 2.0
675,862 - 1.4
675,863 - -1.2
675,863 - 0.1
675,865 + 0.1
675,868 - 0.2
675,870 + -0.3
675,872 + 0.1
675,875 - 0.7
675,885 - 0.3
675,886 + 2.1
675,891 + -0.0
675,901 + -1.3
675,904 + 0.2
675,905 + -0.5
675,979 + -0.2
675,993 - 1.1
676,015 + -0.1
676,035 - 2.0
676,076 + -1.5
676,156 + 3.8
676,183 + -1.2
676,187 + 0.4
676,484 + 1.9