Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3813

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3812: 12180 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 638841 to 639831 12180 mRNA_3813: 12181 - BLAST zinc finger, C3HC4 type (RING finger) protein [Rhizoc..., at 640122 to 642119 12181 mRNA_3814: 12182 - PRINTS-Proline rich extensin signature-PR01217, at 642140 to 643933 12182

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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639,312 - 12180 mRNA_3812 0.48 2.3
639,452 + 12180 mRNA_3812 0.62 1.3
639,578 + 12180 mRNA_3812 0.74 2.4
639,604 - 12180 mRNA_3812 0.77 1.5
639,613 - 12180 mRNA_3812 0.78 1.7
639,728 + 12180 mRNA_3812 0.90 1.2
639,743 - 2.1
639,884 + 0.3
639,887 - 0.8
639,894 + 0.3
640,040 - 0.0
640,042 - 2.9
640,186 + -0.3
640,197 - -0.5
640,474 + 12181 mRNA_3813 0.18 0.7
640,833 + 12181 mRNA_3813 0.36 0.9
641,818 - 12181 mRNA_3813 0.85 -0.1
642,393 - 12182 mRNA_3814 0.14 0.5
642,474 - 12182 mRNA_3814 0.19 -1.2
642,692 - 12182 mRNA_3814 0.31 -0.2
642,695 + 12182 mRNA_3814 0.31 1.9