Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3807

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3806: 12174 - K02365 ESP1 separase, at 618283 to 626082 12174 mRNA_3807: 12175 - HMMPfam-Docking domain of Afi1 for Arf3 in vesicle trafficking-PF07792,HMMPfam-Stabilization of polarity axis-PF08616, at 626477 to 629699 12175 mRNA_3808: 12176 - Hypothetical Protein, at 629784 to 630446 12176

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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626,137 + 1.2
626,141 + 1.6
626,161 + 1.0
626,282 - 1.0
626,295 + 0.2
626,296 - 0.7
626,431 - -0.3
626,440 - 0.1
626,446 + 1.4
626,452 - -0.9
626,553 - 0.3
626,615 - 0.0
626,731 + 0.2
626,740 - 0.9
626,744 - -0.4
626,767 - -0.4
626,808 + 12175 mRNA_3807 0.10 0.5
626,936 - 12175 mRNA_3807 0.14 -0.3
627,298 + 12175 mRNA_3807 0.25 0.6
627,343 + 12175 mRNA_3807 0.27 2.7
627,470 - 12175 mRNA_3807 0.31 0.1
627,618 - 12175 mRNA_3807 0.35 -1.1
627,634 + 12175 mRNA_3807 0.36 1.1
627,640 - 12175 mRNA_3807 0.36 0.7
627,734 + 12175 mRNA_3807 0.39 0.6
628,041 - 12175 mRNA_3807 0.49 -0.0
628,045 + 12175 mRNA_3807 0.49 -0.0
628,099 + 12175 mRNA_3807 0.50 0.0
628,103 + 12175 mRNA_3807 0.50 -0.1
628,245 - 12175 mRNA_3807 0.55 1.7
628,245 - 12175 mRNA_3807 0.55 0.0
628,266 - 12175 mRNA_3807 0.56 1.4
628,333 - 12175 mRNA_3807 0.58 1.5
628,349 - 12175 mRNA_3807 0.58 1.7
628,401 - 12175 mRNA_3807 0.60 0.9
628,490 - 12175 mRNA_3807 0.62 -0.7
628,596 - 12175 mRNA_3807 0.66 1.0
628,636 - 12175 mRNA_3807 0.67 -2.4
628,661 + 12175 mRNA_3807 0.68 0.4
628,724 - 12175 mRNA_3807 0.70 1.0
628,934 + 12175 mRNA_3807 0.76 0.1
629,061 - 12175 mRNA_3807 0.80 0.4
629,107 - 12175 mRNA_3807 0.82 1.9
629,339 - 12175 mRNA_3807 0.89 0.1
629,467 - -1.1
629,467 - 0.4
629,512 + 0.1
630,520 - -1.1
630,642 - 1.0
630,646 + 1.7
630,656 + -0.6
630,668 + -0.2