Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3792

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3791: 12159 - K00287 folA dihydrofolate reductase, at 588857 to 589593 12159 mRNA_3792: 12160 - K12811 DDX46, PRP5 ATP-dependent RNA helicase DDX46/PRP5, at 590008 to 594469 12160 mRNA_3793: 12161 - K15528 FAAH fatty acid amide hydrolase, at 594813 to 596952 12161

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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589,606 + 0.2
589,615 + -1.5
589,618 - 0.6
589,618 - 1.0
589,621 - 1.5
589,627 - 0.1
589,634 - 0.2
589,636 + 3.0
589,660 + 0.6
589,926 - 0.5
589,940 + -2.4
593,957 - 12160 mRNA_3792 0.89 0.7
594,532 + 1.1
594,552 - -0.4
594,555 - -0.9
594,564 - -0.3
594,565 - 0.7
594,568 + 0.6
594,568 + -0.1
594,704 - 1.9
594,721 + 0.1
594,722 + 0.2
594,722 + 1.1
594,723 - -0.3
594,723 - 0.2
594,728 + 0.2
594,731 - 0.2
594,731 + 0.1
594,733 - 0.4
594,734 + -0.1
594,741 + 2.4
594,744 + 1.2
594,887 - 2.7
594,900 - 0.5
594,904 + 0.5
595,044 - 12161 mRNA_3793 0.11 0.9