Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3786

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3785: 12153 - K15178 RTF1 RNA polymerase-associated protein RTF1, at 575682 to 577961 12153 mRNA_3786: 12154 - K00006 GPD1 glycerol-3-phosphate dehydrogenase (NAD+), at 578477 to 580207 12154 mRNA_3787: 12155 - K01626 E2.5.1.54, aroF, aroG, aroH 3-deoxy-7-phosphoheptulonate synthase, at 581185 to 583154 12155

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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578,064 + 0.2
578,071 - -1.5
578,079 + 0.8
578,086 - -1.4
578,096 + -1.6
578,102 + 0.8
578,201 - 0.5
578,223 + -1.2
578,943 - 12154 mRNA_3786 0.27 -2.3
579,517 - 12154 mRNA_3786 0.60 -0.1
579,530 + 12154 mRNA_3786 0.61 -2.6
579,651 - 12154 mRNA_3786 0.68 0.7
579,775 - 12154 mRNA_3786 0.75 0.3
579,932 - 12154 mRNA_3786 0.84 1.8
579,966 - 12154 mRNA_3786 0.86 1.7
580,073 - 0.3
580,256 + 0.9
580,264 + 0.7
580,386 - 1.8
580,390 - -1.1
580,395 - 0.1
580,397 + -1.4
580,398 + 1.6
580,399 + 2.0
580,403 - -0.7
580,405 - -0.4
580,408 - 1.2
580,421 + -0.4
580,449 - 0.2
580,485 - 2.0
580,597 - 2.1
580,693 + 1.3
580,791 + -1.1
580,797 + -0.9
580,797 - -1.0
580,798 + -0.3
580,799 - -1.7
580,805 + 0.6
580,806 - -0.2
580,807 + -0.4
580,807 - 0.6
580,809 - 0.6
580,813 + -0.2
580,813 + -1.5
580,817 - -0.2
580,818 + 0.5
580,822 - -1.7
580,826 + 1.5
580,828 + -0.2
580,829 + 1.2
580,837 + 0.3
580,841 + 0.5
580,845 - -0.2
580,964 - 1.4
580,964 - 1.9
580,979 + 1.0