Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3767

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3766: 12134 - K20372 TBC1D20, GYP8 TBC1 domain family member 20, at 534427 to 536780 12134 mRNA_3767: 12135 - KOG4535 HEAT and armadillo repeat-containing protein, at 536936 to 539895 12135 mRNA_3768: 12136 - HMMPfam-Protein of unknown function (DUF1275)-PF06912, at 540069 to 541238 12136

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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535,949 + 12134 mRNA_3766 0.65 1.0
535,956 + 12134 mRNA_3766 0.65 -1.3
536,212 - 12134 mRNA_3766 0.76 -0.0
536,385 - 12134 mRNA_3766 0.83 1.8
536,522 + 12134 mRNA_3766 0.89 2.0
536,556 + 0.8
536,650 + 0.3
536,673 - -0.3
536,710 + 0.3
536,814 - 1.0
536,816 - 1.1
537,440 - 12135 mRNA_3767 0.17 1.6
537,575 - 12135 mRNA_3767 0.22 0.6
537,581 + 12135 mRNA_3767 0.22 1.0
538,147 - 12135 mRNA_3767 0.41 -1.1
538,308 + 12135 mRNA_3767 0.46 3.3
538,438 + 12135 mRNA_3767 0.51 1.4
538,438 + 12135 mRNA_3767 0.51 -1.1
538,465 - 12135 mRNA_3767 0.52 0.9
538,753 - 12135 mRNA_3767 0.61 3.0
538,777 - 12135 mRNA_3767 0.62 -0.1
538,919 + 12135 mRNA_3767 0.67 -1.0
539,315 - 12135 mRNA_3767 0.80 1.8
539,363 - 12135 mRNA_3767 0.82 2.3
539,478 - 12135 mRNA_3767 0.86 1.0
539,495 + 12135 mRNA_3767 0.86 0.1
539,791 - 0.7
539,795 + 0.5
539,801 + 0.7
539,920 - -0.2
539,934 + 0.7
540,158 - 0.6
540,198 - 12136 mRNA_3768 0.11 -0.8
540,498 + 12136 mRNA_3768 0.37 -0.3
540,656 + 12136 mRNA_3768 0.50 0.3
540,840 + 12136 mRNA_3768 0.66 0.5