Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3749

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3748: 12116 - K00658 DLST, sucB 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase), at 490464 to 492382 12116 mRNA_3749: 12117 - HMMPfam-Nuclear pore complex assembly-PF13934,SUPERFAMILY--SSF57850, at 492760 to 497695 12117 mRNA_3750: 12118 - K13421 UMPS uridine monophosphate synthetase, at 497780 to 498794 12118

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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492,658 + 0.1
492,796 + -1.8
492,812 + -2.0
492,912 + 0.2
493,092 - -1.8
493,403 - 12117 mRNA_3749 0.13 0.0
493,494 - 12117 mRNA_3749 0.15 -0.2
493,536 + 12117 mRNA_3749 0.16 -1.7
494,105 - 12117 mRNA_3749 0.27 1.1
494,139 + 12117 mRNA_3749 0.28 1.9
494,718 + 12117 mRNA_3749 0.40 0.0
495,146 + 12117 mRNA_3749 0.48 3.5
495,290 + 12117 mRNA_3749 0.51 0.4
495,316 - 12117 mRNA_3749 0.52 2.5
495,424 - 12117 mRNA_3749 0.54 0.6
495,426 - 12117 mRNA_3749 0.54 -0.9
495,540 - 12117 mRNA_3749 0.56 1.0
495,569 + 12117 mRNA_3749 0.57 1.7
495,599 - 12117 mRNA_3749 0.58 -0.4
495,741 + 12117 mRNA_3749 0.60 -0.6
495,742 + 12117 mRNA_3749 0.60 1.1
496,449 + 12117 mRNA_3749 0.75 0.7
496,889 - 12117 mRNA_3749 0.84 0.7
496,906 + 12117 mRNA_3749 0.84 1.4
496,922 + 12117 mRNA_3749 0.84 -0.5
497,352 + -0.8