Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3735

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3734: 12102 - Interpro Protein HRI1, at 460954 to 461748 12102 mRNA_3735: 12103 - KOG4842 Protein involved in sister chromatid separation and/or segregation, at 461901 to 463089 12103 mRNA_3736: 12104 - K00573 E2.1.1.77, pcm protein-L-isoaspartate(D-aspartate) O-methyltransferase, at 463337 to 464527 12104

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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460,901 - 1.1
461,224 - 12102 mRNA_3734 0.34 1.5
461,243 - 12102 mRNA_3734 0.36 1.1
461,513 - 12102 mRNA_3734 0.70 -0.2
461,523 + 12102 mRNA_3734 0.72 -0.4
461,562 + 12102 mRNA_3734 0.76 -0.1
461,992 + -0.1
461,996 + -1.9
462,113 - 12103 mRNA_3735 0.18 -0.5
462,143 - 12103 mRNA_3735 0.20 0.2
462,282 + 12103 mRNA_3735 0.32 -1.1
462,566 + 12103 mRNA_3735 0.56 0.9
462,884 + 12103 mRNA_3735 0.83 -0.5
462,885 - 12103 mRNA_3735 0.83 -0.4
463,740 + 12104 mRNA_3736 0.34 -0.5
463,754 + 12104 mRNA_3736 0.35 -0.7
463,990 - 12104 mRNA_3736 0.55 3.3