Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3685

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3684: 12052 - K05955 FNTA protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha, at 343363 to 344847 12052 mRNA_3685: 12053 - KOG4212 RNA-binding protein hnRNP-M, at 345213 to 348082 12053 mRNA_3686: 12054 - SUPERFAMILY--SSF54695, at 348229 to 349499 12054

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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344,849 - -1.1
344,859 - 1.1
344,865 + 0.4
344,867 - -0.3
344,869 - -1.3
344,875 + -0.0
344,889 - 1.0
344,892 + -0.5
345,005 - -0.3
345,028 - -2.4
345,028 - -0.7
345,032 - 0.3
345,047 + -0.2
345,051 + 1.4
345,165 - 0.3
345,170 - 0.2
345,188 - 0.5
345,195 + -0.6
345,195 + -1.4
345,432 + 1.4
345,539 - 12053 mRNA_3685 0.11 -0.2
345,594 + 12053 mRNA_3685 0.13 0.1
345,642 + 12053 mRNA_3685 0.15 0.6
345,746 - 12053 mRNA_3685 0.19 0.9
345,760 + 12053 mRNA_3685 0.19 -3.0
347,911 + -0.9
347,957 - -0.6
348,079 + 1.3
348,230 + 1.7
348,371 - 12054 mRNA_3686 0.11 -1.6
348,395 - 12054 mRNA_3686 0.13 0.4
348,814 - 12054 mRNA_3686 0.46 -0.2
348,832 + 12054 mRNA_3686 0.47 1.7