Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3683

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3682: 12050 - K07203 MTOR, FRAP, TOR serine/threonine-protein kinase mTOR, at 332807 to 341262 12050 mRNA_3683: 12051 - KOG0069 Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily), at 341535 to 343207 12051 mRNA_3684: 12052 - K05955 FNTA protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha, at 343363 to 344847 12052

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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341,242 - 1.6
341,426 + 2.0
341,537 + 1.7
341,560 + 1.2
341,940 - 12051 mRNA_3683 0.24 -1.1
342,132 + 12051 mRNA_3683 0.36 2.1
342,437 + 12051 mRNA_3683 0.54 0.1
342,484 - 12051 mRNA_3683 0.57 -2.1
342,548 - 12051 mRNA_3683 0.61 1.3
342,844 + 12051 mRNA_3683 0.78 -0.0
342,957 - 12051 mRNA_3683 0.85 -0.5
342,965 - 12051 mRNA_3683 0.85 1.2
342,976 + 12051 mRNA_3683 0.86 0.9
342,978 + 12051 mRNA_3683 0.86 0.3
343,107 - -0.5
343,107 - -0.1
343,117 + 0.8
343,134 - 2.8
343,273 + 0.6