Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3679

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3678: 12046 - K14530 RPP40 ribonucleases P/MRP protein subunit RPP40, at 324600 to 326289 12046 mRNA_3679: 12047 - K02370 EXTL3 alpha-1,4-N-acetylglucosaminyltransferase EXTL3, at 326327 to 327835 12047 mRNA_3680: 12048 - Hypothetical Protein, at 328001 to 330038 12048

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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326,123 - 1.4
326,454 - -0.7
326,456 - 0.0
326,464 + 1.4
326,779 + 12047 mRNA_3679 0.30 1.4
326,913 - 12047 mRNA_3679 0.39 -0.1
327,068 + 12047 mRNA_3679 0.49 0.3
327,069 - 12047 mRNA_3679 0.49 3.3
327,082 + 12047 mRNA_3679 0.50 3.6
327,183 - 12047 mRNA_3679 0.57 -1.2
327,201 + 12047 mRNA_3679 0.58 -0.1
327,319 + 12047 mRNA_3679 0.66 0.2
327,325 + 12047 mRNA_3679 0.66 0.8
327,609 - 12047 mRNA_3679 0.85 -0.6
327,622 - 12047 mRNA_3679 0.86 0.6
327,623 - 12047 mRNA_3679 0.86 0.3
327,628 - 12047 mRNA_3679 0.86 2.1
327,650 + 12047 mRNA_3679 0.88 0.0
327,653 - 12047 mRNA_3679 0.88 -0.2
327,656 + 12047 mRNA_3679 0.88 -0.5
327,768 - 0.7
327,772 - -0.3
327,788 + -0.3
327,788 + 0.6
327,913 - 0.9
327,925 - 1.7
327,938 - -0.8
328,125 + 0.4
328,655 - 12048 mRNA_3680 0.32 0.6
328,659 + 12048 mRNA_3680 0.32 0.7