Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3677

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3676: 12044 - K11833 USP2_21 ubiquitin carboxyl-terminal hydrolase 2/21, at 319421 to 320803 12044 mRNA_3677: 12045 - KOG0266 WD40 repeat-containing protein, at 321286 to 323880 12045 mRNA_3678: 12046 - K14530 RPP40 ribonucleases P/MRP protein subunit RPP40, at 324600 to 326289 12046

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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321,015 + 0.7
321,121 + -0.6
321,171 + 1.5
321,293 + 0.7
321,311 - 1.5
321,448 - 0.3
321,527 + -0.0
321,712 - 12045 mRNA_3677 0.16 1.6
321,859 - 12045 mRNA_3677 0.22 0.9
321,980 - 12045 mRNA_3677 0.27 2.5
321,986 - 12045 mRNA_3677 0.27 0.0
322,158 + 12045 mRNA_3677 0.34 0.0
322,634 + 12045 mRNA_3677 0.52 0.0
322,762 + 12045 mRNA_3677 0.57 -0.2
322,935 + 12045 mRNA_3677 0.64 0.3
323,188 + 12045 mRNA_3677 0.73 0.8
323,190 - 12045 mRNA_3677 0.73 -0.1
323,337 + 12045 mRNA_3677 0.79 -0.6
323,769 - -0.1
323,941 + 0.7
324,054 + 0.0
324,368 - 2.6
324,393 - 1.0
324,393 - 1.4
324,394 - 1.9
324,398 - 0.6
324,402 + 2.0
324,406 + -0.0
324,548 + 2.3