Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3674

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3673: 12041 - K11251 H2A histone H2A, at 313222 to 314004 12041 mRNA_3674: 12042 - K00128 ALDH aldehyde dehydrogenase (NAD+), at 314540 to 316836 12042 mRNA_3675: 12043 - K11251 H2A histone H2A, at 317314 to 317987 12043

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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313,638 + 12041 mRNA_3673 0.53 -0.3
313,642 - 12041 mRNA_3673 0.54 1.1
313,906 - 12041 mRNA_3673 0.87 -0.1
313,919 + 12041 mRNA_3673 0.89 -0.0
314,075 + 0.2
314,202 - 0.6
314,206 + 1.7
314,210 + -0.2
314,228 - 0.9
314,229 + -0.9
314,234 + 0.2
314,235 - 0.3
314,271 - -0.1
314,272 + 1.9
314,278 + -2.0
314,278 + 1.8
314,278 - 0.2
314,279 + 0.4
314,282 - 0.3
314,283 + -0.1
314,285 + -1.1
314,288 - 2.4
314,289 + 0.9
314,297 - -0.9
314,311 - -0.9
314,311 - 0.3
314,312 + 0.7
314,344 + 1.9
314,345 + 0.6
314,351 - -1.0
314,351 - 0.4
314,359 + -0.5
314,376 + 1.4
314,377 + -0.1
314,400 + 0.4
314,465 + -0.8
314,515 + -3.1
314,518 + 0.4
314,522 + -0.1
314,533 - -0.8
314,546 + 0.9
314,675 - 3.0
314,676 + 1.0
314,825 + 12042 mRNA_3674 0.12 -2.3
314,925 + 12042 mRNA_3674 0.17 0.2
314,966 + 12042 mRNA_3674 0.19 -0.5
315,270 + 12042 mRNA_3674 0.32 0.7
315,536 + 12042 mRNA_3674 0.43 -0.3
316,536 + 12042 mRNA_3674 0.87 0.3
316,969 - 1.1
316,969 - -0.4
317,135 - -2.7
317,153 + 0.2
317,391 - 12043 mRNA_3675 0.11 2.0
317,592 + 12043 mRNA_3675 0.41 2.1
317,597 + 12043 mRNA_3675 0.42 -0.5
317,611 + 12043 mRNA_3675 0.44 -1.0