Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3652

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3651: 12019 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 258338 to 258829 12019 mRNA_3652: 12020 - K17278 PGRMC1_2 membrane-associated progesterone receptor component, at 259462 to 260271 12020 mRNA_3653: 12021 - KOG2437 Muskelin, at 260397 to 263923 12021

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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258,563 + 12019 mRNA_3651 0.46 0.6
258,579 - 12019 mRNA_3651 0.49 0.6
258,584 - 12019 mRNA_3651 0.50 -0.5
258,588 + 12019 mRNA_3651 0.51 -0.7
258,589 + 12019 mRNA_3651 0.51 0.4
258,590 + 12019 mRNA_3651 0.51 1.3
258,876 + -2.3
258,882 - 1.2
258,982 - 0.4
259,004 - 0.9
259,010 - 1.8
259,011 + -0.3
259,110 - 0.2
259,149 - 0.1
259,306 + 0.3
259,431 - 1.8
259,459 + -2.0
259,576 - 12020 mRNA_3652 0.14 0.2
259,600 + 12020 mRNA_3652 0.17 0.6
259,727 + 12020 mRNA_3652 0.33 2.6
259,736 - 12020 mRNA_3652 0.34 0.6
259,766 + 12020 mRNA_3652 0.38 2.0
259,915 + 12020 mRNA_3652 0.56 -0.0
260,019 + 12020 mRNA_3652 0.69 -0.6
260,029 + 12020 mRNA_3652 0.70 -0.5
260,045 + 12020 mRNA_3652 0.72 -2.1
260,322 - -1.8
260,324 + 2.8
260,329 - -0.5
260,330 + 1.4
260,335 + -1.9
260,336 + 0.0
260,340 + 0.8
260,458 - -1.8
260,490 + 0.7
260,498 + 0.1
260,517 + -0.1
260,620 - -0.2
260,620 - 0.6
260,659 + 0.2
260,772 + 12021 mRNA_3653 0.11 1.1
260,779 + 12021 mRNA_3653 0.11 0.5
260,781 + 12021 mRNA_3653 0.11 -0.5
260,787 + 12021 mRNA_3653 0.11 0.1
260,792 + 12021 mRNA_3653 0.11 0.1
260,816 + 12021 mRNA_3653 0.12 -2.3
260,928 - 12021 mRNA_3653 0.15 -1.3
260,947 + 12021 mRNA_3653 0.16 1.6
261,105 + 12021 mRNA_3653 0.20 -0.7