Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3634

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3633: 12001 - KOG1074 Transcriptional repressor SALM, at 211047 to 213295 12001 mRNA_3634: 12002 - KOG2456 Aldehyde dehydrogenase, at 213705 to 215567 12002 mRNA_3635: 12003 - BLAST similar to An07g01410 [Aspergillus kawachii IFO 4308], at 215730 to 216270 12003

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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212,740 + 12001 mRNA_3633 0.75 0.0
212,828 + 12001 mRNA_3633 0.79 0.8
213,027 - 12001 mRNA_3633 0.88 0.1
213,304 - -0.4
213,430 - 2.4
213,771 + 1.4
214,018 - 12002 mRNA_3634 0.17 0.2
214,027 + 12002 mRNA_3634 0.17 1.1
214,047 + 12002 mRNA_3634 0.18 -0.8
214,070 + 12002 mRNA_3634 0.20 1.0
214,266 + 12002 mRNA_3634 0.30 2.1
214,350 - 12002 mRNA_3634 0.35 -0.7
215,042 - 12002 mRNA_3634 0.72 -1.1
215,330 - 12002 mRNA_3634 0.87 1.6
215,507 - -0.4
215,627 - 1.7
215,638 + -0.5
215,663 - 0.2
215,672 + 2.4
215,952 + 12003 mRNA_3635 0.41 0.5
216,212 + 12003 mRNA_3635 0.89 1.4
216,392 - 1.4
216,401 + 1.1
216,412 - 4.1
216,539 - 1.4
216,541 - -1.3
216,546 + 0.5
216,567 + 1.1