Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3627

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3626: 11994 - BLAST SH3 domain-containing protein [Rhizoctonia solani AG-..., at 198016 to 198652 11994 mRNA_3627: 11995 - SUPERFAMILY--SSF51110,SUPERFAMILY--SSF51126, at 199548 to 202220 11995 mRNA_3628: 11996 - K10849 ERCC1 DNA excision repair protein ERCC-1, at 202614 to 203898 11996

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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199,044 + 1.0
199,200 - 0.4
199,204 + -1.0
199,342 + 0.7
199,511 + -0.1
199,512 + -1.2
199,783 - -1.9
199,804 + -0.7
200,002 + 11995 mRNA_3627 0.17 -0.5
200,655 + 11995 mRNA_3627 0.41 1.1
200,869 + 11995 mRNA_3627 0.49 -0.8
200,948 - 11995 mRNA_3627 0.52 0.1
200,960 + 11995 mRNA_3627 0.53 -0.6
201,502 - 11995 mRNA_3627 0.73 -0.1
201,792 - 11995 mRNA_3627 0.84 0.4
201,941 - 11995 mRNA_3627 0.90 0.4
201,976 - -0.4
201,976 + 0.9
202,114 - -0.6
202,243 + 1.4
202,370 + 0.9
202,374 + 1.0
202,391 - 0.3
202,395 + -0.4
202,401 + 0.0
202,409 - -1.3
202,529 - -0.3
202,539 + 0.4
202,545 - 0.0
202,548 - 1.2
202,555 - -0.4
202,557 + -1.4
202,564 - 0.4
202,613 - 0.4
202,685 - 0.3
202,687 - 1.0
202,701 + -0.9
202,747 - 11996 mRNA_3628 0.10 1.7
202,786 + 11996 mRNA_3628 0.13 -0.8
202,855 + 11996 mRNA_3628 0.19 1.0
202,967 + 11996 mRNA_3628 0.27 -0.3
202,998 + 11996 mRNA_3628 0.30 0.8
203,138 - 11996 mRNA_3628 0.41 0.4
203,147 - 11996 mRNA_3628 0.41 -0.8