Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3626

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3625: 11993 - K01176 AMY, amyA, malS alpha-amylase, at 194842 to 197624 11993 mRNA_3626: 11994 - BLAST SH3 domain-containing protein [Rhizoctonia solani AG-..., at 198016 to 198652 11994 mRNA_3627: 11995 - SUPERFAMILY--SSF51110,SUPERFAMILY--SSF51126, at 199548 to 202220 11995

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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197,225 - 11993 mRNA_3625 0.86 -0.2
197,364 - 1.4
197,393 - 0.4
197,498 - 0.6
197,522 - 0.1
197,536 + -1.4
197,542 + -0.3
197,545 - 2.0
197,633 + -3.2
197,644 - -0.3
197,681 - 1.8
197,686 + -1.4
197,688 - 0.1
197,696 - 3.2
197,696 - 0.0
197,706 + 0.6
197,713 - 1.1
197,713 - 0.8
197,750 - 0.9
197,755 - -1.2
197,878 - -0.9
197,882 + 3.2
197,885 + 0.3
197,888 + 0.5
197,889 + -0.8
197,891 + 0.5
197,898 - 1.7
197,898 - 0.2
198,011 - -0.3
198,019 - 1.5
198,033 - -0.6
198,196 - 11994 mRNA_3626 0.28 2.9
198,489 - 11994 mRNA_3626 0.74 0.9
199,044 + 1.0
199,200 - 0.4
199,204 + -1.0
199,342 + 0.7
199,511 + -0.1
199,512 + -1.2