Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3623

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3623: 11991 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 190258 to 192689 11991 mRNA_3624: 11992 - SUPERFAMILY--SSF52047, at 193379 to 194590 11992

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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189,260 - 0.6
189,272 - -2.0
189,292 - 0.8
189,296 - 1.2
189,304 - -0.2
189,371 + 0.4
189,408 - 0.3
189,432 + 0.2
189,445 - 0.5
189,456 + 0.7
190,499 + 0.3
190,899 + 11991 mRNA_3623 0.26 -1.4
191,043 - 11991 mRNA_3623 0.32 -0.1
191,504 - 11991 mRNA_3623 0.51 -0.0
192,235 + 11991 mRNA_3623 0.81 0.6
192,361 - 11991 mRNA_3623 0.86 1.1
192,665 - -0.1
192,814 + -0.6
192,873 + 1.1
192,949 - 1.8
192,960 + 0.0
192,977 - 2.8
192,985 - -0.3
193,114 + 1.6
193,124 + 2.0
193,126 + 1.1
193,139 + 1.1