Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3620

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3619: 11987 - HMMPfam-X-Pro dipeptidyl-peptidase (S15 family)-PF02129,HMMPfam-X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain-PF08530,SMART-X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain-SM00939,SUPERFAMILY--SSF49785,SUPERFAMILY--SSF53474,TIGRFAM-/NonD hydrolase CocE/NonD family protein-TIGR00976, at 179234 to 181455 11987 mRNA_3620: 11988 - K15777 DOPA 4,5-DOPA dioxygenase extradiol, at 181762 to 183020 11988 mRNA_3621: 11989 - K00252 GCDH, gcdH glutaryl-CoA dehydrogenase, at 183204 to 185483 11989

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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180,795 - 11987 mRNA_3619 0.70 0.4
180,881 - 11987 mRNA_3619 0.74 -0.4
180,929 + 11987 mRNA_3619 0.76 -1.6
180,989 + 11987 mRNA_3619 0.79 1.4
181,365 - 0.6
181,579 + 0.8
181,613 - 0.5
181,615 - -0.4
181,621 - -0.7
181,627 + -0.3
181,656 - -0.1
181,685 - 0.0
181,687 - 2.9
181,695 + 0.0
181,698 - -0.1
181,701 - 1.5
181,711 + -0.0
181,853 - 0.8
182,001 + 11988 mRNA_3620 0.19 -0.6
182,026 + 11988 mRNA_3620 0.21 0.3
182,114 + 11988 mRNA_3620 0.28 0.4
182,441 - 11988 mRNA_3620 0.54 -0.9
182,732 - 11988 mRNA_3620 0.77 -0.2
182,749 + 11988 mRNA_3620 0.78 0.4
183,188 - 1.6