Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3619

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3618: 11986 - HMMPfam-Cupin domain-PF07883,SUPERFAMILY--SSF51182, at 178257 to 178945 11986 mRNA_3619: 11987 - HMMPfam-X-Pro dipeptidyl-peptidase (S15 family)-PF02129,HMMPfam-X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain-PF08530,SMART-X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain-SM00939,SUPERFAMILY--SSF49785,SUPERFAMILY--SSF53474,TIGRFAM-/NonD hydrolase CocE/NonD family protein-TIGR00976, at 179234 to 181455 11987 mRNA_3620: 11988 - K15777 DOPA 4,5-DOPA dioxygenase extradiol, at 181762 to 183020 11988

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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178,269 + 0.6
178,440 + 11986 mRNA_3618 0.27 1.1
178,539 + 11986 mRNA_3618 0.41 0.2
178,679 + 11986 mRNA_3618 0.61 1.0
178,731 + 11986 mRNA_3618 0.69 -0.1
178,850 - 11986 mRNA_3618 0.86 1.4
178,851 - 11986 mRNA_3618 0.86 2.5
178,856 + 11986 mRNA_3618 0.87 0.5
179,128 - 2.1
179,134 + 1.1
179,163 - 3.6
179,193 - 0.5
179,197 + -0.9
179,201 + 0.0
179,324 - 0.9
179,662 - 11987 mRNA_3619 0.19 2.2
180,225 + 11987 mRNA_3619 0.45 0.9
180,225 + 11987 mRNA_3619 0.45 3.3
180,643 - 11987 mRNA_3619 0.63 0.2
180,795 - 11987 mRNA_3619 0.70 0.4
180,881 - 11987 mRNA_3619 0.74 -0.4
180,929 + 11987 mRNA_3619 0.76 -1.6
180,989 + 11987 mRNA_3619 0.79 1.4
181,365 - 0.6
181,579 + 0.8
181,613 - 0.5
181,615 - -0.4
181,621 - -0.7
181,627 + -0.3
181,656 - -0.1
181,685 - 0.0
181,687 - 2.9
181,695 + 0.0
181,698 - -0.1
181,701 - 1.5
181,711 + -0.0
181,853 - 0.8
182,001 + 11988 mRNA_3620 0.19 -0.6
182,026 + 11988 mRNA_3620 0.21 0.3
182,114 + 11988 mRNA_3620 0.28 0.4
182,441 - 11988 mRNA_3620 0.54 -0.9