Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3594

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3593: 11961 - K06978 K06978 uncharacterized protein, at 125373 to 127423 11961 mRNA_3594: 11962 - K01555 FAH, fahA fumarylacetoacetase, at 127609 to 129068 11962 mRNA_3595: 11963 - K09838 ZEP, ABA1 zeaxanthin epoxidase, at 129467 to 131137 11963

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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127,200 - 11961 mRNA_3593 0.89 -1.7
127,201 + 11961 mRNA_3593 0.89 0.0
127,205 + 11961 mRNA_3593 0.89 0.9
127,342 - -0.2
127,366 + 1.1
127,372 + 0.2
127,375 - -1.4
127,483 + 0.2
127,486 + 0.4
127,487 - -0.0
127,504 - -1.3
127,523 - 2.4
127,527 - 1.3
127,653 - -0.9
127,681 + -1.0
127,692 - 2.5
127,720 + 0.4
127,835 + 11962 mRNA_3594 0.15 -0.3
127,989 + 11962 mRNA_3594 0.26 0.1
128,247 - 11962 mRNA_3594 0.44 -0.1
128,271 + 11962 mRNA_3594 0.45 1.1
128,548 - 11962 mRNA_3594 0.64 1.7
128,693 + 11962 mRNA_3594 0.74 0.3
129,007 + 1.3
129,304 - 3.3
129,856 - 11963 mRNA_3595 0.23 2.0