Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3589

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3588: 11956 - KOG0254 Predicted transporter (major facilitator superfamily), at 113212 to 115744 11956 mRNA_3589: 11957 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF101908,SUPERFAMILY--SSF81383, at 116230 to 117801 11957

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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115,790 - 3.4
116,215 + 0.3
116,230 - 1.0
116,234 + 1.9
116,372 + 0.1
117,133 + 11957 mRNA_3589 0.57 -0.2
117,270 + 11957 mRNA_3589 0.66 1.3
117,308 - 11957 mRNA_3589 0.69 0.6
117,377 - 11957 mRNA_3589 0.73 0.4
117,448 - 11957 mRNA_3589 0.77 1.2
117,686 - 2.3
117,689 + 1.5
117,693 - 0.5
117,838 + 0.9
117,855 + -0.3
118,129 - -1.6
118,140 + 0.2
118,261 + -1.1
118,287 + 2.9
118,420 + 0.5
118,570 + 0.2
118,732 - 0.8
118,736 + 0.8
118,743 + -1.6
118,745 - -0.7
118,746 - 0.4
118,746 + 0.4
118,747 - 2.2
118,749 + -0.1
118,753 - 2.3
118,753 + -1.9