Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3588

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3587: 11955 - K12836 U2AF1 splicing factor U2AF 35 kDa subunit, at 111593 to 112967 11955 mRNA_3588: 11956 - KOG0254 Predicted transporter (major facilitator superfamily), at 113212 to 115744 11956 mRNA_3589: 11957 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF101908,SUPERFAMILY--SSF81383, at 116230 to 117801 11957

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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113,196 - -0.1
113,198 + 0.9
113,676 - 11956 mRNA_3588 0.18 0.3
114,061 + 11956 mRNA_3588 0.34 1.7
114,081 + 11956 mRNA_3588 0.34 0.8
114,154 - 11956 mRNA_3588 0.37 -0.2
114,174 + 11956 mRNA_3588 0.38 2.7
114,322 - 11956 mRNA_3588 0.44 0.5
114,393 + 11956 mRNA_3588 0.47 1.3
114,461 + 11956 mRNA_3588 0.49 0.8
114,508 - 11956 mRNA_3588 0.51 -0.4
114,528 + 11956 mRNA_3588 0.52 0.1
114,540 + 11956 mRNA_3588 0.52 0.7
114,555 - 11956 mRNA_3588 0.53 0.2
114,555 - 11956 mRNA_3588 0.53 -0.8
114,794 + 11956 mRNA_3588 0.62 -0.4
114,901 + 11956 mRNA_3588 0.67 3.3
115,197 - 11956 mRNA_3588 0.78 1.0
115,790 - 3.4
116,215 + 0.3
116,230 - 1.0
116,234 + 1.9
116,372 + 0.1