Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3577

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3576: 11944 - Hypothetical Protein, at 87392 to 87994 11944 mRNA_3577: 11945 - K04567 KARS, lysS lysyl-tRNA synthetase, class II, at 88992 to 92589 11945 mRNA_3578: 11946 - HMMPfam-Glutathione-dependent formaldehyde-activating enzyme-PF04828,SUPERFAMILY--SSF51316, at 92960 to 93719 11946

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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88,030 - -0.2
88,142 - -1.9
88,436 - 0.3
88,741 - 1.4
88,894 - 2.6
88,898 - -1.2
90,413 - 11945 mRNA_3577 0.39 0.6
91,602 + 11945 mRNA_3577 0.73 1.2
92,548 - 0.0
92,550 - 1.7
92,554 + 1.0
92,568 + 3.0
92,570 - -0.7
92,702 - 2.6
92,706 + 0.8
92,711 - 0.3
92,712 - -0.9
92,717 - 0.3
92,723 - 1.0
92,724 - -1.1
92,728 - -0.1
92,744 + -2.2
92,766 - -0.2
92,778 - -0.3
92,815 + 0.4
92,834 - -0.7
92,841 - 0.1
92,846 - 2.3
92,846 + 2.9
92,847 + -1.4
92,861 - -1.0
92,863 - -1.5
92,869 - -0.1
92,875 + 0.5
92,876 + 0.2
92,876 + 2.2
92,879 + -1.4
92,879 + 0.0
92,886 - 2.9